>>> python-numpy 1.13.3 Extracting gzip -d -c /accts/mlweber1/instance-1/dl/python-numpy/numpy-1.13.3.tar.gz | tar --strip-components=1 -C /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3 -xf - >>> python-numpy 1.13.3 Patching Applying 0001-no-fenv-on-uclibc.patch using patch: patching file numpy/core/include/numpy/ufuncobject.h patching file numpy/core/src/npymath/ieee754.c.src Applying 0002-Add-support-of-ARC.patch using patch: patching file numpy/core/include/numpy/npy_cpu.h patching file numpy/core/include/numpy/npy_endian.h >>> python-numpy 1.13.3 Configuring rm -f /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/site.cfg echo "[DEFAULT]" >> /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/site.cfg echo "library_dirs = /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib" >> /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/site.cfg echo "include_dirs = /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/include" >> /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/site.cfg echo "libraries =" >> /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/site.cfg >>> python-numpy 1.13.3 Building (cd /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3//; _PYTHON_SYSCONFIGDATA_NAME="_sysconfigdata_m_linux_arm-linux-gnueabihf" PATH="/accts/mlweber1/instance-1/output/host/bin:/accts/mlweber1/instance-1/output/host/sbin:/usr/bin:/bin" PYTHONPATH="/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/" PYTHONNOUSERSITE=1 _python_sysroot=/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot _python_prefix=/usr _python_exec_prefix=/usr /accts/mlweber1/instance-1/output/host/bin/python setup.py build --fcompiler=None) blas_opt_info: blas_mkl_info: libraries mkl_rt not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE blis_info: libraries not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE openblas_info: libraries not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS libraries tatlas not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE atlas_3_10_blas_info: libraries satlas not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in ['/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib'] NOT AVAILABLE blas_info: customize UnixCCompiler C compiler: /accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Os -fPIC creating /tmp/tmpqky8jd4w/tmp creating /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w compile options: '-I/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/include -c' arm-linux-gnueabihf-gcc: /tmp/tmpqky8jd4w/source.c /accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lcblas -o /tmp/tmpqky8jd4w/a.out /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib/libcblas.so: undefined reference to `scnrm2_' /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib/libcblas.so: undefined reference to `scasum_' collect2: error: ld returned 1 exit status /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib/libcblas.so: undefined reference to `scnrm2_' /accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib/libcblas.so: undefined reference to `scasum_' collect2: error: ld returned 1 exit status /accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lblas -o /tmp/tmpqky8jd4w/a.out Running from numpy source directory. /accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py:572: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o: In function `main': /tmp/tmpqky8jd4w/source.c:6: undefined reference to `cblas_ddot' collect2: error: ld returned 1 exit status /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o: In function `main': /tmp/tmpqky8jd4w/source.c:6: undefined reference to `cblas_ddot' collect2: error: ld returned 1 exit status Traceback (most recent call last): File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/unixccompiler.py", line 196, in link self.spawn(linker + ld_args) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/ccompiler.py", line 89, in m = lambda self, *args, **kw: func(self, *args, **kw) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg)) distutils.errors.DistutilsExecError: Command "/accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lcblas -o /tmp/tmpqky8jd4w/a.out" failed with exit status 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 1717, in has_cblas extra_postargs=info.get('extra_link_args', [])) File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/ccompiler.py", line 734, in link_executable debug, extra_preargs, extra_postargs, None, target_lang) File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/unixccompiler.py", line 198, in link raise LinkError(msg) distutils.errors.LinkError: Command "/accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lcblas -o /tmp/tmpqky8jd4w/a.out" failed with exit status 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/unixccompiler.py", line 196, in link self.spawn(linker + ld_args) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/ccompiler.py", line 89, in m = lambda self, *args, **kw: func(self, *args, **kw) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg)) distutils.errors.DistutilsExecError: Command "/accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lblas -o /tmp/tmpqky8jd4w/a.out" failed with exit status 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "setup.py", line 392, in setup_package() File "setup.py", line 384, in setup_package setup(**metadata) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/core.py", line 135, in setup config = configuration() File "setup.py", line 166, in configuration config.add_subpackage('numpy') File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 1029, in add_subpackage caller_level = 2) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 998, in get_subpackage caller_level = caller_level + 1) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 935, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "numpy/setup.py", line 10, in configuration config.add_subpackage('core') File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 1029, in add_subpackage caller_level = 2) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 998, in get_subpackage caller_level = caller_level + 1) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/misc_util.py", line 935, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "numpy/core/setup.py", line 826, in configuration blas_info = get_info('blas_opt', 0) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 380, in get_info return cl().get_info(notfound_action) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 572, in get_info self.calc_info() File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 1643, in calc_info blas_info = get_info('blas') File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 380, in get_info return cl().get_info(notfound_action) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 572, in get_info self.calc_info() File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 1679, in calc_info lib = self.has_cblas(info) File "/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/numpy/distutils/system_info.py", line 1723, in has_cblas extra_postargs=info.get('extra_link_args', [])) File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/ccompiler.py", line 734, in link_executable debug, extra_preargs, extra_postargs, None, target_lang) File "/accts/mlweber1/instance-1/output/target/usr/lib/python3.6/distutils/unixccompiler.py", line 198, in link raise LinkError(msg) distutils.errors.LinkError: Command "/accts/mlweber1/instance-1/output/host/bin/arm-linux-gnueabihf-gcc /tmp/tmpqky8jd4w/tmp/tmpqky8jd4w/source.o -L/accts/mlweber1/instance-1/output/host/arm-buildroot-linux-gnueabihf/sysroot/usr/lib -lblas -o /tmp/tmpqky8jd4w/a.out" failed with exit status 1 make: *** [/accts/mlweber1/instance-1/output/build/python-numpy-1.13.3/.stamp_built] Error 1 make: Leaving directory `/accts/mlweber1/instance-1/buildroot'